Package: metalite.sl 0.1.0

metalite.sl: Subject-Level Analysis Using 'metalite'

Analyzes subject-level data in clinical trials using the 'metalite' data structure. The package simplifies the workflow to create production-ready tables, listings, and figures discussed in the subject-level analysis chapters of "R for Clinical Study Reports and Submission" by Zhang et al. (2022) <https://r4csr.org/>.

Authors:Benjamin Wang [aut, cre], Yujie Zhao [aut], Hiroaki Fukuda [aut], PoYao Niu [aut], Nan Xiao [aut], Jeetener Chauhan [ctb], Li Ma [ctb], Chen Wang [ctb], Merck Sharp & Dohme Corp [cph]

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metalite.sl.pdf |metalite.sl.html✨
metalite.sl/json (API)
NEWS

# Install 'metalite.sl' in R:
install.packages('metalite.sl', repos = c('https://wangben718.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.48 score 7 scripts 27 exports 78 dependencies

Last updated 23 hours agofrom:281a0a8ec1. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 24 2024
R-4.5-winOKDec 24 2024
R-4.5-linuxOKDec 24 2024
R-4.4-winOKDec 24 2024
R-4.4-macOKDec 24 2024
R-4.3-winOKDec 24 2024
R-4.3-macOKDec 24 2024

Exports:collect_baselinedefmt_pctextend_exp_durationformat_base_charformat_base_char_subgroupformat_dispositionformat_exp_durationformat_sl_summaryformat_trt_compliancemeta_slmeta_sl_examplemeta_sl_exposure_exampleplotly_exp_durationprepare_base_charprepare_base_char_subgroupprepare_dispositionprepare_exp_durationprepare_sl_summaryprepare_trt_compliancereact_base_charreact_dispositionrtf_base_charrtf_base_char_subgrouprtf_dispositionrtf_exp_durationrtf_sl_summaryrtf_trt_compliance

Dependencies:askpassbase64encbrewbslibcachemclicolorspacecpp11crosstalkcurldata.tabledigestdplyrevaluatefansifarverfastmapfontawesomeforestlyfsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttrisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemetalitemetalite.aemgcvmimemunsellnlmeopensslpillarpkgconfigplotlypromisespurrrr2rtfR6rappdirsRColorBrewerRcppreactablereactRrlangrmarkdownsassscalesstringistringrsystibbletidyrtidyselecttinytexutf8uuidvctrsviridisLitewithrxfunyaml

Baseline Characteristics Table

Rendered frombaseline-character.Rmdusingknitr::rmarkdownon Dec 24 2024.

Last update: 2024-12-23
Started: 2024-12-23

Build an Interactive Baseline Characteristic Table

Rendered frominteractive-baseline.Rmdusingknitr::rmarkdownon Dec 24 2024.

Last update: 2024-12-23
Started: 2024-12-23

Disposition Table

Rendered fromdisposition.Rmdusingknitr::rmarkdownon Dec 24 2024.

Last update: 2024-12-23
Started: 2024-12-23

Exposure Duration Table

Rendered fromexp_duration.Rmdusingknitr::rmarkdownon Dec 24 2024.

Last update: 2024-12-23
Started: 2024-12-23

Introduction to metalite.sl

Rendered frommetalite.sl.Rmdusingknitr::rmarkdownon Dec 24 2024.

Last update: 2024-12-23
Started: 2024-12-23

Treatment Compliance Table

Rendered fromtrt_compliance.Rmdusingknitr::rmarkdownon Dec 24 2024.

Last update: 2024-12-23
Started: 2024-12-23

Readme and manuals

Help Manual

Help pageTopics
Count number of subjectscollect_baseline
Deformat percentdefmt_pct
Add cumulative count and summary stats for categories for exposure duration analysisextend_exp_duration
Format Baseline Characteristics Analysisformat_base_char
Prepare data for Subgroup Analysis for Baseline Characteristicformat_base_char_subgroup
Format Disposition Analysisformat_disposition
Format Exposure Duration Analysisformat_exp_duration
Prepare data for baseline characteristic tableformat_sl_summary
Format Treatment Compliance Analysisformat_trt_compliance
Create metadata for subject-level analysis tablemeta_sl
Create an example 'meta_sl_example' objectmeta_sl_example
Create an example 'meta_sl_exposure_example' objectmeta_sl_exposure_example
Create an interactive plot for exposure durationplotly_exp_duration
Prepare data for baseline characteristic tableprepare_base_char
Prepare data for treatment compliance tableprepare_base_char_subgroup
Prepare data for treatment compliance tableprepare_disposition
Prepare data for exposure duration tableprepare_exp_duration
Prepare data for baseline characteristic tableprepare_sl_summary
Prepare data for treatment compliance tableprepare_trt_compliance
Display interactive baseline characteristic tables with AE subgroup analysisreact_base_char
Display interactive disposition tables with AE subgroup analysisreact_disposition
Baseline characteristic tablertf_base_char
Subgroup Analysis for Baseline Characteristicrtf_base_char_subgroup
Disposition tablertf_disposition
Exposure duration tablertf_exp_duration
Baseline characteristic tablertf_sl_summary
Treatment compliance tablertf_trt_compliance